Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBX5

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293, HP1a ChIP
cell line
HEK293
chip antibody
anti-FLAG M2 affinity gel
antibody vendor
Sigma-Aldrich
antibody catalog number
A2220

Sequenced DNA Library

library_name
GSM971949: HEK293_HP1a_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
9474255
Reads aligned (%)
89.6
Duplicates removed (%)
4.6
Number of peaks
448 (qval < 1E-05)

hg38

Number of total reads
9474255
Reads aligned (%)
92.9
Duplicates removed (%)
2.1
Number of peaks
294 (qval < 1E-05)

Base call quality data from DBCLS SRA