SRX170374
GSM971947: HEK293 Brd3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293, Brd3 ChIP
cell line
HEK293
chip antibody
anti-FLAG M2 affinity gel
antibody vendor
Sigma-Aldrich
antibody catalog number
A2220

Sequenced DNA Library

library_name
GSM971947: HEK293_Brd3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12901656
Reads aligned (%)
93.7
Duplicates removed (%)
2.5
Number of peaks
440 (qval < 1E-05)

hg19

Number of total reads
12901656
Reads aligned (%)
93.4
Duplicates removed (%)
3.4
Number of peaks
494 (qval < 1E-05)

Base call quality data from DBCLS SRA