SRX170356
GSM971343: Bcell Brg1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Blood
tissue
Blood
developmental stage
Adult
genotype/variation
wild type
cell type
Bcell
chip antibody details
Anti-Brg1 (Khavari, P. A., et al., 1993, Nature, 366:170-174)

Sequenced DNA Library

library_name
GSM971343: Bcell_Brg1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15568445
Reads aligned (%)
82.0
Duplicates removed (%)
17.5
Number of peaks
4946 (qval < 1E-05)

hg19

Number of total reads
15568445
Reads aligned (%)
81.3
Duplicates removed (%)
18.2
Number of peaks
4861 (qval < 1E-05)

Base call quality data from DBCLS SRA