SRX170354
GSM971341: Bcell H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Blood
tissue
Blood
developmental stage
Adult
genotype/variation
wild type
cell type
Bcell
chip antibody details
Abcam, ab8580

Sequenced DNA Library

library_name
GSM971341: Bcell_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16123221
Reads aligned (%)
88.9
Duplicates removed (%)
6.1
Number of peaks
17939 (qval < 1E-05)

hg19

Number of total reads
16123221
Reads aligned (%)
88.3
Duplicates removed (%)
7.0
Number of peaks
17859 (qval < 1E-05)

Base call quality data from DBCLS SRA