Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

source_name
Blood
tissue
Blood
developmental stage
Adult
genotype/variation
wild type
cell type
CD4
chip antibody details
Anti-Brg1 (Khavari, P. A., et al., 1993, Nature, 366:170-174)

Sequenced DNA Library

library_name
GSM971332: CD4_Brg1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18710163
Reads aligned (%)
45.1
Duplicates removed (%)
12.4
Number of peaks
1422 (qval < 1E-05)

hg38

Number of total reads
18710163
Reads aligned (%)
45.9
Duplicates removed (%)
11.7
Number of peaks
1388 (qval < 1E-05)

Base call quality data from DBCLS SRA