SRX1690212
GSM2113528: NGP INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
NGP
NA
NA

Attributes by original data submitter

Sample

source_name
NGP_Neuroblastoma
cell line
NGP
cell type
neuroblastoma cell line
growth condition
10% FBS, DMEM
treated with
None
chip antibody
NA
chip antibody vendor
NA
input
NA
barcode
CGATGT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43373072
Reads aligned (%)
95.5
Duplicates removed (%)
7.1
Number of peaks
693 (qval < 1E-05)

hg19

Number of total reads
43373072
Reads aligned (%)
95.1
Duplicates removed (%)
7.9
Number of peaks
787 (qval < 1E-05)

Base call quality data from DBCLS SRA