Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TWIST1
wikigenes
PDBj
CellType: BE(2)-C
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1690207
GSM2113523: BE2C TWIST; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TWIST1
Cell type
Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
BE(2)-C_Neuroblastoma
cell line
BE(2)-C
cell type
neuroblastoma cell line
growth condition
10% FBS, DMEM
treated with
None
chip antibody
TWIST
chip antibody vendor
abcam
input
BE2C_INPUT
barcode
TAACGCTG
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
53123407
Reads aligned (%)
98.0
Duplicates removed (%)
69.9
Number of peaks
24852 (qval < 1E-05)
hg19
Number of total reads
53123407
Reads aligned (%)
97.7
Duplicates removed (%)
70.7
Number of peaks
24801 (qval < 1E-05)
Base call quality data from
DBCLS SRA