Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESC
strain
129/Ola
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinkedand sonicated chromatin was incubated with the ab indicated. Complex associated DNA was purified and sequenced. Libraries were constructed as per manufacturers instructions for Illumina Tru-seq.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
20600066
Reads aligned (%)
63.4
Duplicates removed (%)
9.5
Number of peaks
490 (qval < 1E-05)

mm9

Number of total reads
20600066
Reads aligned (%)
63.2
Duplicates removed (%)
9.6
Number of peaks
533 (qval < 1E-05)

Base call quality data from DBCLS SRA