SRX1688234
GSM2111695: input dko.rep3 new; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESC
strain
129/C57
antibody
none
genotype
MLL3/4 double KO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinkedand sonicated chromatin was incubated with the ab indicated. Complex associated DNA was purified and sequenced. Libraries were constructed as per manufacturers instructions for Illumina Tru-seq.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29809463
Reads aligned (%)
94.8
Duplicates removed (%)
14.6
Number of peaks
660 (qval < 1E-05)

mm9

Number of total reads
29809463
Reads aligned (%)
94.5
Duplicates removed (%)
14.6
Number of peaks
704 (qval < 1E-05)

Base call quality data from DBCLS SRA