Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cxxc1

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
thymus
cell type
DP thymocytes
genotype
Cxxc1+/-
chip antibody
Cxxc1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were prepared using the KAPA HTP Library Preparation Kit (Kapa Biosystems, USA) according to the manufacture’s protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
11661490
Reads aligned (%)
88.3
Duplicates removed (%)
24.9
Number of peaks
497 (qval < 1E-05)

mm9

Number of total reads
11661490
Reads aligned (%)
88.0
Duplicates removed (%)
25.1
Number of peaks
485 (qval < 1E-05)

Base call quality data from DBCLS SRA