SRX1681505
GSM1606419: H3K4me3 adult endocrine (EA67); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic endocrine cells
NA
NA

Attributes by original data submitter

Sample

source_name
pancreas
cell type
endocrine
age
adult
antibody
H3K4me3
tissue
pancreas

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera Tagmentation (Buenrostro et al 2013. PMID:24097267) Illumina HiSeq/TruSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13233768
Reads aligned (%)
70.0
Duplicates removed (%)
37.4
Number of peaks
8254 (qval < 1E-05)

hg19

Number of total reads
13233768
Reads aligned (%)
68.4
Duplicates removed (%)
39.3
Number of peaks
8141 (qval < 1E-05)

Base call quality data from DBCLS SRA