SRX1681504
GSM1606417: H3K4me3 juvenile endocrine (EA47); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic endocrine cells
NA
NA

Attributes by original data submitter

Sample

source_name
pancreas
cell type
endocrine
age
juvenile
antibody
H3K4me3
tissue
pancreas

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera Tagmentation (Buenrostro et al 2013. PMID:24097267) Illumina HiSeq/TruSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48537408
Reads aligned (%)
98.1
Duplicates removed (%)
52.1
Number of peaks
23399 (qval < 1E-05)

hg19

Number of total reads
48537408
Reads aligned (%)
96.8
Duplicates removed (%)
54.9
Number of peaks
23104 (qval < 1E-05)

Base call quality data from DBCLS SRA