SRX1681503
GSM1606416: H3K4me3 juvenile endocrine (EA71); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic endocrine cells
NA
NA

Attributes by original data submitter

Sample

source_name
pancreas
cell type
endocrine
age
juvenile
antibody
H3K4me3
tissue
pancreas

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera Tagmentation (Buenrostro et al 2013. PMID:24097267) Illumina HiSeq/TruSeq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22699412
Reads aligned (%)
98.6
Duplicates removed (%)
33.0
Number of peaks
14018 (qval < 1E-05)

hg19

Number of total reads
22699412
Reads aligned (%)
97.1
Duplicates removed (%)
35.9
Number of peaks
13893 (qval < 1E-05)

Base call quality data from DBCLS SRA