Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX8

Cell type

Cell type Class
Gonad
Cell type
JHOS-4
Primary Tissue
Ovary
Tissue Diagnosis
Adenocarcinoma Cystic

Attributes by original data submitter

Sample

source_name
JHOS4
cell line
JHOS4
cell line type
High grade serous ovarian carcinoma
antibody
PAX8 antibody (Novus, Product #NBP1-32440, Littleton, CO)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
1134715
Reads aligned (%)
77.5
Duplicates removed (%)
10.2
Number of peaks
432 (qval < 1E-05)

hg19

Number of total reads
1134715
Reads aligned (%)
59.6
Duplicates removed (%)
29.3
Number of peaks
596 (qval < 1E-05)

Base call quality data from DBCLS SRA