SRX1677198
GSM2107711: REH input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
REH
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
REH cell line
cell line
REH
cell type
B-ALL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime). TruSeq

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
90444309
Reads aligned (%)
98.4
Duplicates removed (%)
11.4
Number of peaks
22165 (qval < 1E-05)

hg19

Number of total reads
90444309
Reads aligned (%)
97.6
Duplicates removed (%)
12.0
Number of peaks
22017 (qval < 1E-05)

Base call quality data from DBCLS SRA