SRX1674094
GSM2104324: RNAPII Ser2p WT rep1 ChIP-seq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Young adults
age
Young adults
genotype
Wt
chip antibody
Ser2p Bethyl (A300-654A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated worms and immunoprecipitated DNA complexes were isolated with antibody. Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
56496066
Reads aligned (%)
97.7
Duplicates removed (%)
42.2
Number of peaks
10162 (qval < 1E-05)

ce10

Number of total reads
56496066
Reads aligned (%)
97.7
Duplicates removed (%)
42.2
Number of peaks
10125 (qval < 1E-05)

Base call quality data from DBCLS SRA