Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx2

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
marrow derived MSC
cell type
marrow-derived mesenchymal stem cells
differentiation media
none
treatment
vehicle
antibody
RUNX2 (Santa Cruz, M-70, sc10758, lot# D1411)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
97898966
Reads aligned (%)
31.3
Duplicates removed (%)
66.6
Number of peaks
47325 (qval < 1E-05)

mm9

Number of total reads
97898966
Reads aligned (%)
31.2
Duplicates removed (%)
66.6
Number of peaks
47326 (qval < 1E-05)

Base call quality data from DBCLS SRA