Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

Breast cancer cells

NA

NA

Sample

source_name

breast cancer

cell type

breast cancer cell line

subtype

triple negative breast cancer

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP was performed using the EZ-Magna ChIP™ G - Chromatin Immunoprecipitation Kit (Millipore) according to manufacturers. instructions. Libraries were prepared using KAPA HTP library preparation kit (KK8234).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

38256646

Reads aligned (%)

88.1

Duplicates removed (%)

11.4

Number of peaks

50400 (qval < 1E-05)

hg19

Number of total reads

38256646

Reads aligned (%)

87.0

Duplicates removed (%)

11.9

Number of peaks

49623 (qval < 1E-05)