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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: EpiLC
ATCC
MeSH
RIKEN BRC
SRX1657692
GSM2097797: ∆Liz D4 H3K27me3; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
EpiLC
NA
NA
Attributes by original data submitter
Sample
source_name
E14 mouse embryonic stem cells
cell-type
delta-Liz Epiblast-like
antibody
Tri-Methyl-Histone H3 (Lys27) (C36B11) Rabbit mAb #9737
sample type
Day 4 of Activin/FGF2 treatment
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were obtained from cross-linked nuclei, and chromatin was immunopreciptated with antibodies against H3K27me3
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
44463904
Reads aligned (%)
98.3
Duplicates removed (%)
10.0
Number of peaks
1039 (qval < 1E-05)
mm9
Number of total reads
44463904
Reads aligned (%)
98.2
Duplicates removed (%)
10.1
Number of peaks
1068 (qval < 1E-05)
Base call quality data from
DBCLS SRA