Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiLC
NA
NA

Attributes by original data submitter

Sample

source_name
E14 mouse embryonic stem cells
cell-type
wild-type Epiblast-like
antibody
Tri-Methyl-Histone H3 (Lys27) (C36B11) Rabbit mAb #9735
sample type
Day 7 of Activin/FGF2 treatment

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were obtained from cross-linked nuclei, and chromatin was immunopreciptated with antibodies against H3K27me3

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
42228291
Reads aligned (%)
98.4
Duplicates removed (%)
12.0
Number of peaks
644 (qval < 1E-05)

mm9

Number of total reads
42228291
Reads aligned (%)
98.2
Duplicates removed (%)
12.0
Number of peaks
640 (qval < 1E-05)

Base call quality data from DBCLS SRA