Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR4A1

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
acute myeloid leukemia
cell line
acute myeloid leukemia cell line Kasumi-1
antibody
anti-NR4A1 (Santa Cruz, sc-990)
treatment
NR4A1 mRNA electroporation
genotype/variation
NR4A1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
40269753
Reads aligned (%)
70.3
Duplicates removed (%)
27.9
Number of peaks
22674 (qval < 1E-05)

hg38

Number of total reads
40269753
Reads aligned (%)
72.3
Duplicates removed (%)
26.5
Number of peaks
22717 (qval < 1E-05)

Base call quality data from DBCLS SRA