Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate tumor
cell line
LNCaP
genotype
Ctrl
antibody
AR (santa cruz, sc-815X, lot K0713)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin in nuclear fraction were sheared to 200-500bp using an ultrasonic sonicator (Misonix), Lysates were clarified from sonicated nuclei and protein-DNA complexes were immunoprecipitated using the indicated antisera. DNA was then uncrosslinked from protein, purified and sequenced using Illumina Genome Analyzers followig protocols recommended by the manufacturer. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiScanSQ

hg38

Number of total reads
37757237
Reads aligned (%)
76.4
Duplicates removed (%)
9.1
Number of peaks
7290 (qval < 1E-05)

hg19

Number of total reads
37757237
Reads aligned (%)
75.8
Duplicates removed (%)
10.5
Number of peaks
7221 (qval < 1E-05)

Base call quality data from DBCLS SRA