Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDK9

Cell type

Cell type Class
Blood
Cell type
MOLT-4
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL
cell line
MOLT4
antibody
CDK9
antibody manufacturer
Santa Cruz
antibody catalog number
C-20
drug treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard DNA extraction from MOLT4 cell lines using cell lysis Probe sonicator 3 minutes total sonication time (1 sec on, 4 sec off, 60% amplitude) on ice library prep with Rubicon TruePlex kit

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
127445823
Reads aligned (%)
66.0
Duplicates removed (%)
11.7
Number of peaks
33371 (qval < 1E-05)

hg38

Number of total reads
127445823
Reads aligned (%)
67.5
Duplicates removed (%)
10.6
Number of peaks
35022 (qval < 1E-05)

Base call quality data from DBCLS SRA