SRX1632696
GSM2089660: T3 B Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Oligodendrocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Immature oligodendrocytes
strain
C57BL/6
cell type
Immature oligodendrocytes
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Klf6-DNA complexes were isolated with a Rabbit polyclonal anti-Klf6 anitbody (Santa Cruz). Illumina Truseq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
71379778
Reads aligned (%)
96.8
Duplicates removed (%)
31.1
Number of peaks
527 (qval < 1E-05)

mm9

Number of total reads
71379778
Reads aligned (%)
96.6
Duplicates removed (%)
31.0
Number of peaks
595 (qval < 1E-05)

Base call quality data from DBCLS SRA