Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
cell line VCaP
shRNA
PRMT5 sh1
chip antibody
ERG
treatment
DHT
cell line
VCaP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP protocol - Purification using Magio beads Kapa HTP library preparation kit on a Sciclone NGS workstation using MagBio beads

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
24419416
Reads aligned (%)
78.4
Duplicates removed (%)
9.2
Number of peaks
1721 (qval < 1E-05)

hg38

Number of total reads
24419416
Reads aligned (%)
81.4
Duplicates removed (%)
6.9
Number of peaks
2250 (qval < 1E-05)

Base call quality data from DBCLS SRA