Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse trophoblast stem cells
development stage
mouse trophoblast stem cells
chip antibody
none
overexpression
mouse TS cell RO-7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
500cells were washed three times in 0.5% BSA-PBS solution. Lysates were clarified from micrococcal nuclease treated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to KAPA Hyper Prep Kit for illumina platform (kk8504)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17277515
Reads aligned (%)
99.1
Duplicates removed (%)
6.4
Number of peaks
151 (qval < 1E-05)

mm9

Number of total reads
17277515
Reads aligned (%)
99.1
Duplicates removed (%)
6.5
Number of peaks
118 (qval < 1E-05)

Base call quality data from DBCLS SRA