Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jund

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pre-activated CD8+ T cells
strain
C57BL/6
tissue
Spleen
chip antibody
JunD (sc-74, Santa Cruz)
genotype/variation
wild type

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
T cells were chemically crosslinked and sonicated cells to generate fragmented genomic DNA. DNA fragments purified from agarose gels and used for cluster generation and sequencing. Chromatin immunoprecipitation was performed using the following antibodies: BACH2, JunD, p300, H3K4me1, H3K27ac PCR products were barcoded (indexed) and sequenced on Illumina HiSeq 2000 platform or Genome Analyzer II platform.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
65334420
Reads aligned (%)
92.0
Duplicates removed (%)
16.4
Number of peaks
5341 (qval < 1E-05)

mm9

Number of total reads
65334420
Reads aligned (%)
91.7
Duplicates removed (%)
16.3
Number of peaks
5223 (qval < 1E-05)

Base call quality data from DBCLS SRA