SRX160915
GSM970828: IgG for CTCF SMC1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
BCBL1 pleural effusion lymphoma, IgG ChIP
cell line
BCBL1
cell type
KSHV-infected pleural effusion lymphoma cells
chip antibody
Mouse IgG [Santa Cruz, Cat#2025, Lot#B1710]

Sequenced DNA Library

library_name
GSM970828: IgG_for_CTCF_SMC1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26106367
Reads aligned (%)
97.8
Duplicates removed (%)
4.7
Number of peaks
1207 (qval < 1E-05)

hg19

Number of total reads
26106367
Reads aligned (%)
97.5
Duplicates removed (%)
5.1
Number of peaks
1580 (qval < 1E-05)

Base call quality data from DBCLS SRA