SRX160914
GSM970829: IgG for KSHV LANA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
BCBL1 pleural effusion lymphoma, IgG ChIP
cell line
BCBL1
cell type
KSHV-infected pleural effusion lymphoma cells
chip antibody
Rabbit IgG [Santa Cruz, Cat#sc-2027, Lot#12310]

Sequenced DNA Library

library_name
GSM970829: IgG_for_KSHV_LANA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23613465
Reads aligned (%)
98.1
Duplicates removed (%)
28.9
Number of peaks
227 (qval < 1E-05)

hg19

Number of total reads
23613465
Reads aligned (%)
97.5
Duplicates removed (%)
29.8
Number of peaks
460 (qval < 1E-05)

Base call quality data from DBCLS SRA