SRX160831
GSM970267: IgG ChIPSeq Differentiated; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated mouse ES cells
cell type
mixed differentiated cell population derived from mouse ES cells after 4.5 days in vitro differentiation induced by retinoic acid
passage
29
strain
E14 [129P2/OlaHsd]
chip antibody
IgG (Santa Cruz Biotechnology, Sc-2027)

Sequenced DNA Library

library_name
GSM970267: IgG_ChIPSeq_Differentiated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16299404
Reads aligned (%)
85.2
Duplicates removed (%)
16.6
Number of peaks
602 (qval < 1E-05)

mm9

Number of total reads
16299404
Reads aligned (%)
85.0
Duplicates removed (%)
16.8
Number of peaks
666 (qval < 1E-05)

Base call quality data from DBCLS SRA