SRX160741
GSM969572: SUZ12 ChIPSeq LNCaP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUZ12

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP prostate cancer cells
genotype/variation
androgen-dependent prostate cancer cells
passages
22-24
chip antibody
anti-SUZ12 (Cell Signaling (3737))

Sequenced DNA Library

library_name
GSM969572: SUZ12_ChIPSeq_LNCaP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41462050
Reads aligned (%)
92.4
Duplicates removed (%)
66.2
Number of peaks
1082 (qval < 1E-05)

hg19

Number of total reads
41462050
Reads aligned (%)
91.7
Duplicates removed (%)
67.9
Number of peaks
1016 (qval < 1E-05)

Base call quality data from DBCLS SRA