Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP-abl (abl) prostate cancer cells
genotype/variation
androgen-independent prostate cancer cells
passages
61-64
chip antibody
anti-H3K4me3 (Abcam (ab8580))

Sequenced DNA Library

library_name
GSM969569: H3K4me3_ChIPSeq_abl
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
6491076
Reads aligned (%)
93.0
Duplicates removed (%)
25.2
Number of peaks
19252 (qval < 1E-05)

hg19

Number of total reads
6491076
Reads aligned (%)
92.5
Duplicates removed (%)
25.8
Number of peaks
19130 (qval < 1E-05)

Base call quality data from DBCLS SRA