SRX160731
GSM969562: EZH2 ChIPSeq abl; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EZH2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP-abl (abl) prostate cancer cells
genotype/variation
androgen-independent prostate cancer cells
passages
61-64
chip antibody
anti-EZH2 (Active Motif (39639) and BD Biosciences (612666))

Sequenced DNA Library

library_name
GSM969562: EZH2_ChIPSeq_abl
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38320507
Reads aligned (%)
99.7
Duplicates removed (%)
34.2
Number of peaks
3279 (qval < 1E-05)

hg19

Number of total reads
38320507
Reads aligned (%)
99.7
Duplicates removed (%)
34.6
Number of peaks
3257 (qval < 1E-05)

Base call quality data from DBCLS SRA