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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: MKN-45
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1605577
GSM2076194: MKN45.input; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
MKN-45
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
MKN45-input
cell line
MKN45
chip antibody
input
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
A protocol generated at Myer`s laboratory (http://hudsonalpha.org/myers-lab/protocols) libraries were prepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12542436
Reads aligned (%)
83.1
Duplicates removed (%)
6.3
Number of peaks
241 (qval < 1E-05)
hg19
Number of total reads
12542436
Reads aligned (%)
82.4
Duplicates removed (%)
6.5
Number of peaks
192 (qval < 1E-05)
Base call quality data from
DBCLS SRA