SRX160413
GSM967655: H3K4me1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
F1 C/B trophoblast stem cells
antibody
H3K4me1 (Abcam ab8895)
cell type
F1 C/B trophoblast stem cells
data type
ChIP-Seq
parent of origin
CAST/EiJ mother X C57BL/6J father
tsc passage number
10-15
total obtained reads
129423696

Sequenced DNA Library

library_name
GSM967655: H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
129423696
Reads aligned (%)
97.5
Duplicates removed (%)
64.2
Number of peaks
51920 (qval < 1E-05)

mm9

Number of total reads
129423696
Reads aligned (%)
97.4
Duplicates removed (%)
64.3
Number of peaks
52050 (qval < 1E-05)

Base call quality data from DBCLS SRA