SRX1597603
GSM2069651: Pooled Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
FaDu
Primary Tissue
Nasal Pharynx
Site of Extraction
Nasal Pharynx
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
FaDu Cells
cell line
HNSCC cell line FaDu
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-IT® ChIP-Seq Kit (Active Motif) was used for chromatin preparation and ChIP using antibodies for STAT1 (Santa Cruz sc-345) or STAT3 (Santa Cruz sc-482). ChIP-IT® ChIP-Seq Kit (Active Motif) was used for library construction.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41761303
Reads aligned (%)
91.8
Duplicates removed (%)
4.8
Number of peaks
1452 (qval < 1E-05)

hg19

Number of total reads
41761303
Reads aligned (%)
90.9
Duplicates removed (%)
6.2
Number of peaks
1232 (qval < 1E-05)

Base call quality data from DBCLS SRA