Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT3

Cell type

Cell type Class
Others
Cell type
FaDu
Primary Tissue
Nasal Pharynx
Site of Extraction
Nasal Pharynx
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
FaDu Cells
cell line
HNSCC cell line FaDu
treatment
BB608
chip antibody
STAT3 (Santa Cruz sc-482)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-IT® ChIP-Seq Kit (Active Motif) was used for chromatin preparation and ChIP using antibodies for STAT1 (Santa Cruz sc-345) or STAT3 (Santa Cruz sc-482). ChIP-IT® ChIP-Seq Kit (Active Motif) was used for library construction.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
36778581
Reads aligned (%)
83.8
Duplicates removed (%)
8.5
Number of peaks
3950 (qval < 1E-05)

hg38

Number of total reads
36778581
Reads aligned (%)
85.3
Duplicates removed (%)
7.5
Number of peaks
4067 (qval < 1E-05)

Base call quality data from DBCLS SRA