Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
MM1S Multiple Myeloma cells_DMSO
cell line
MM1S
cell type
Multiple Myeloma cell line
treated with
DMSO (vehicle control)
chip antibody
H3K4me3
chip antibody vendor
Millpore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde for 8 minutes at room temperature, sonicated on a Bioruptor Pico, incubated for an hour with pre-blocked protein A seppharose beads before being incubated with 1ug of antibody overnight at 4 degrees. The lysate was allowed to incubate with protein A beads before being washed and subejcted to proteinase K digestion Libraries were constructed using NEBnext Ultra DNA library prep kit according to manufactures instructions

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
7217292
Reads aligned (%)
99.4
Duplicates removed (%)
6.8
Number of peaks
23118 (qval < 1E-05)

hg19

Number of total reads
7217292
Reads aligned (%)
99.1
Duplicates removed (%)
7.1
Number of peaks
23132 (qval < 1E-05)

Base call quality data from DBCLS SRA