SRX159195
GSM959634: LS180 SMRT 125; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR2

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_SMRT_125
cell line
LS180 cells
passage number
12-28
cell type
cultured CRC cells
antibody
SMRT (Affinity Bioreagents, PA1-843)

Sequenced DNA Library

library_name
GSM959634: LS180_SMRT_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29696227
Reads aligned (%)
64.9
Duplicates removed (%)
79.6
Number of peaks
906 (qval < 1E-05)

hg19

Number of total reads
29696227
Reads aligned (%)
64.2
Duplicates removed (%)
81.3
Number of peaks
983 (qval < 1E-05)

Base call quality data from DBCLS SRA