Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR2

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_SMRT_Veh
cell line
LS180 cells
passage number
12-27
cell type
cultured CRC cells
antibody
SMRT (Affinity Bioreagents, PA1-843)

Sequenced DNA Library

library_name
GSM959633: LS180_SMRT_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
20556666
Reads aligned (%)
11.2
Duplicates removed (%)
79.2
Number of peaks
729 (qval < 1E-05)

hg38

Number of total reads
20556666
Reads aligned (%)
12.2
Duplicates removed (%)
77.7
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA