SRX159191
GSM959630: LS180 MED1 125; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_MED1_125
cell line
LS180 cells
passage number
12-24
cell type
cultured CRC cells
antibody
MED1 (Santa Cruz, M-255, sc-8998)

Sequenced DNA Library

library_name
GSM959630: LS180_MED1_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51751025
Reads aligned (%)
55.2
Duplicates removed (%)
82.8
Number of peaks
478 (qval < 1E-05)

hg19

Number of total reads
51751025
Reads aligned (%)
54.7
Duplicates removed (%)
84.6
Number of peaks
570 (qval < 1E-05)

Base call quality data from DBCLS SRA