SRX159189
GSM959628: LS180 CBP 125; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CREBBP

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_CBP_125
cell line
LS180 cells
passage number
12-22
cell type
cultured CRC cells
antibody
CBP (Santa Cruz, A-22, sc-3996)

Sequenced DNA Library

library_name
GSM959628: LS180_CBP_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43130665
Reads aligned (%)
57.6
Duplicates removed (%)
82.0
Number of peaks
1158 (qval < 1E-05)

hg19

Number of total reads
43130665
Reads aligned (%)
57.0
Duplicates removed (%)
83.5
Number of peaks
1279 (qval < 1E-05)

Base call quality data from DBCLS SRA