SRX159187
GSM959626: LS180 SRC1 125; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOA1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_SRC1_125
cell line
LS180 cells
passage number
12-20
cell type
cultured CRC cells
antibody
SRC-1 (Santa Cruz, M-341, sc-8495)

Sequenced DNA Library

library_name
GSM959626: LS180_SRC1_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
39416114
Reads aligned (%)
59.0
Duplicates removed (%)
79.7
Number of peaks
515 (qval < 1E-05)

hg38

Number of total reads
39416114
Reads aligned (%)
59.6
Duplicates removed (%)
77.9
Number of peaks
426 (qval < 1E-05)

Base call quality data from DBCLS SRA