SRX159186
GSM959625: LS180 SRC1 Veh; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOA1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_SRC1_Veh
cell line
LS180 cells
passage number
12-19
cell type
cultured CRC cells
antibody
SRC-1 (Santa Cruz, M-341, sc-8495)

Sequenced DNA Library

library_name
GSM959625: LS180_SRC1_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40989479
Reads aligned (%)
62.5
Duplicates removed (%)
73.5
Number of peaks
461 (qval < 1E-05)

hg19

Number of total reads
40989479
Reads aligned (%)
61.9
Duplicates removed (%)
75.1
Number of peaks
894 (qval < 1E-05)

Base call quality data from DBCLS SRA