SRX159139
GSM959057: INPUT HPB-ALL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
T-cell acute lymphoblastic leukemia cells
cell line
HPB-ALL
chip antibody
NONE, INPUT

Sequenced DNA Library

library_name
GSM959057: INPUT_HPB-ALL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
130538054
Reads aligned (%)
82.2
Duplicates removed (%)
12.3
Number of peaks
1639 (qval < 1E-05)

hg19

Number of total reads
130538054
Reads aligned (%)
81.6
Duplicates removed (%)
13.3
Number of peaks
1501 (qval < 1E-05)

Base call quality data from DBCLS SRA