SRX159138
GSM959056: ChIP-seq ICN1 HPB-ALL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOTCH1

Cell type

Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
T-cell acute lymphoblastic leukemia cells
cell line
HPB-ALL
chip antibody
ICN1, rabbit polyclonal raised against amino acids 2278 to 2470 of human Notch1 (Wang et al PNAS 2010)

Sequenced DNA Library

library_name
GSM959056: ChIP-seq_ICN1_HPB-ALL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
149545591
Reads aligned (%)
60.4
Duplicates removed (%)
29.2
Number of peaks
53236 (qval < 1E-05)

hg38

Number of total reads
149545591
Reads aligned (%)
61.4
Duplicates removed (%)
28.4
Number of peaks
53650 (qval < 1E-05)

Base call quality data from DBCLS SRA