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For hg19
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BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NOTCH1
wikigenes
PDBj
CellType: HPB-ALL
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX159138
GSM959056: ChIP-seq ICN1 HPB-ALL; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NOTCH1
Cell type
Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
T-cell acute lymphoblastic leukemia cells
cell line
HPB-ALL
chip antibody
ICN1, rabbit polyclonal raised against amino acids 2278 to 2470 of human Notch1 (Wang et al PNAS 2010)
Sequenced DNA Library
library_name
GSM959056: ChIP-seq_ICN1_HPB-ALL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
149545591
Reads aligned (%)
60.4
Duplicates removed (%)
29.2
Number of peaks
53236 (qval < 1E-05)
hg38
Number of total reads
149545591
Reads aligned (%)
61.4
Duplicates removed (%)
28.4
Number of peaks
53650 (qval < 1E-05)
Base call quality data from
DBCLS SRA