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For hg19
Colocalization
Target Genes (TSS ± 1kb)
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For hg38
Colocalization
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Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ZNF76
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX159134
GSM959052: ChIP-seq ZNF76 FLP76 T4; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ZNF76
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
derived from HEK293, human embryonic kidney cells
cell line
FLP76
cell line specificity
HEK293-T-Rex inducible cell line expressing ZNF76
treatment
4h Induction with 1µg/mL ofdoxycycline
chip antibody
ZNF76, mouse monoclonal (Santa Cruz Biotechnology, cat. #sc-81147)
Sequenced DNA Library
library_name
GSM959052: ChIP-seq_ZNF76_FLP76_T4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
26523782
Reads aligned (%)
83.2
Duplicates removed (%)
14.0
Number of peaks
5566 (qval < 1E-05)
hg38
Number of total reads
26523782
Reads aligned (%)
84.3
Duplicates removed (%)
13.4
Number of peaks
5516 (qval < 1E-05)
Base call quality data from
DBCLS SRA