Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
derived from HEK293, human embryonic kidney cells
cell line
293T-Rex
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)

Sequenced DNA Library

library_name
GSM959048: ChIP-seq_ZNF143_293T-rex
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
33242705
Reads aligned (%)
85.4
Duplicates removed (%)
13.4
Number of peaks
2411 (qval < 1E-05)

hg38

Number of total reads
33242705
Reads aligned (%)
87.1
Duplicates removed (%)
12.2
Number of peaks
2287 (qval < 1E-05)

Base call quality data from DBCLS SRA