Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
immortalized cervical cancer derived cell line
cell line
HeLa S3
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)

Sequenced DNA Library

library_name
GSM959045: ChIP-seq_ZNF143_HeLa_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
25680106
Reads aligned (%)
91.4
Duplicates removed (%)
6.2
Number of peaks
3661 (qval < 1E-05)

hg38

Number of total reads
25680106
Reads aligned (%)
93.4
Duplicates removed (%)
4.8
Number of peaks
3594 (qval < 1E-05)

Base call quality data from DBCLS SRA