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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ZNF143
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX159127
GSM959045: ChIP-seq ZNF143 HeLa rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ZNF143
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
immortalized cervical cancer derived cell line
cell line
HeLa S3
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)
Sequenced DNA Library
library_name
GSM959045: ChIP-seq_ZNF143_HeLa_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25680106
Reads aligned (%)
98.2
Duplicates removed (%)
4.8
Number of peaks
3594 (qval < 1E-05)
hg19
Number of total reads
25680106
Reads aligned (%)
97.5
Duplicates removed (%)
6.2
Number of peaks
3661 (qval < 1E-05)
Base call quality data from
DBCLS SRA