SRX159095
GSM958758: Input in Asynchronous Cells; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HuH7 cells, asynchronously cycling
cell type
HuH7
cycling state
asynchronous
antibody
None

Sequenced DNA Library

library_name
GSM958758: Input in Asynchronous Cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26345848
Reads aligned (%)
99.0
Duplicates removed (%)
40.6
Number of peaks
810 (qval < 1E-05)

hg19

Number of total reads
26345848
Reads aligned (%)
98.2
Duplicates removed (%)
42.2
Number of peaks
1007 (qval < 1E-05)

Base call quality data from DBCLS SRA